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TOOLS

SHOREmap v3.x

SHOREmap is a computational tool implementing a method that enables simple and straightforward mapping-by-sequencing analysis.

et al.

findGSE​​

findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model. The current version works on Linux & Mac OS X with R version 3.3.1 or above.

et al.

SyRI

SyRI is a novel method for identifying differences between genome assemblies. It identifies structurally conserved (syntenic) and rearranged (inversions, translocations, and duplications) regions. SyRI also reports structural variations (indels, CNVs) and SNPs in all syntenic and rearranged regions.

et al.

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