PUBLICATIONS
Selected Publications
2022
Rapid large-scale genomic integression in Arabidopsis suecica via an autoallohexaploid bridge
Vidya Oruganti, Helena Toegelová, Aleš Pečinka, Andreas Madlung, Korbinian Schneeberger
doi: https://doi.org/10.1093/genetics/iyac132
plotsr: visualizing structural similarities and rearrangements between multiple genomes
Manish Goel, Korbinian Schneeberger
doi: https://doi.org/10.1101/2020.05.15.444292
Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar
Hequan Sun, Wen-Biao Jiao, Kristin Krause, José A. Campoy, Manish Goel, Kat Folz-Donahue, Christian Kukat, Bruno Huettel,
Korbinian Schneeberger
doi: https://doi.org/10.1101/2020.05.15.444292
2020
The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana
Wen-Biao Jiao, Vipul Patel, Janoas Klasen, Fang Liu, Petra Pecinkova, Marina Ferrand, Isabelle Gy, Christine Camilleri, Sigi Effgen,
Maarten Koornneef, Ales Pecinka, Olivier Loudet, Korbinian Schneeberger
doi: https://doi.org/10.1101/2020.04.24.060046 10.1038/s41467-020-14779-y.
Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes
José A. Campoy, Hequan Sun, Manish Goel, Wen-Biao Jiao, Kat Folz-Donahue, Christian Kukat, Manuel Rubio, David Ruiz,
Bruno Huettel, Korbinian Schneeberger
doi: https://doi.org/10.1101/2020.04.24.060046 10.1038/s41467-020-14779-y.
Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics
Jiao WB, Schneeberger K.
Nat Commun. 202 Feb 20;11(1):989. doi: 10.1038/s41467-020-14779-y.
2019
SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies
Goel M, Sun H, Jiao WB, Schneeberger K.
Genome Biol. 2019 Dec 16;20(1):277. doi: 10.1186/s13059-019-1911-0.
Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination
Hequan Sun, Beth A Rowan, Pádraic J Flood, Ronny Brandt, Janina Fuss, Angela M Hancock, Richard W Michelmore, Bruno Huettel,
Korbinian Schneeberger
doi: https://doi.org/10.1101/2021.05.15.444292
Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation
Kiefer C, Willing EM, Jiao WB, Sun H, Piednoël M, Hümann U, Hartwig B, Koch MA, Schneeberger K.
Nat Plants. 2019 Aug;5(8):846-855.doi: 10.1038/s41477-019-0486-9. Epub 2019 Jul 29.
2018
findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies
Sun H, Ding J, Piednoël M, Schneeberger K.
Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637.
2017
The impact of third generation genomic technologies on plant genome assembly
Jiao WB, Schneeberger K.
Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data
Jiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoël M, Woetzel S, Madrid-Herrero E,
Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G, Schneeberger K.
Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3.