PUBLICATIONS Selected Publications 2022 Rapid large-scale genomic integression in Arabidopsis suecica via an autoallohexaploid bridgeVidya Oruganti, Helena Toegelová, Aleš Pečinka, Andreas Madlung, Korbinian Schneebergerdoi: https://doi.org/10.1093/genetics/iyac132 plotsr: visualizing structural similarities and rearrangements between multiple genomesManish Goel, Korbinian Schneebergerdoi: https://doi.org/10.1101/2020.05.15.444292 Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivarHequan Sun, Wen-Biao Jiao, Kristin Krause, José A. Campoy, Manish Goel, Kat Folz-Donahue, Christian Kukat, Bruno Huettel,Korbinian Schneebergerdoi: https://doi.org/10.1101/2020.05.15.444292 2020 The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thalianaWen-Biao Jiao, Vipul Patel, Janoas Klasen, Fang Liu, Petra Pecinkova, Marina Ferrand, Isabelle Gy, Christine Camilleri, Sigi Effgen,Maarten Koornneef, Ales Pecinka, Olivier Loudet, Korbinian Schneebergerdoi: https://doi.org/10.1101/2020.04.24.060046 10.1038/s41467-020-14779-y. Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomesJosé A. Campoy, Hequan Sun, Manish Goel, Wen-Biao Jiao, Kat Folz-Donahue, Christian Kukat, Manuel Rubio, David Ruiz,Bruno Huettel, Korbinian Schneebergerdoi: https://doi.org/10.1101/2020.04.24.060046 10.1038/s41467-020-14779-y. Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamicsJiao WB, Schneeberger K.Nat Commun. 202 Feb 20;11(1):989. doi: 10.1038/s41467-020-14779-y. 2019 SyRI: finding genomic rearrangements and local sequence differences from whole-genome assembliesGoel M, Sun H, Jiao WB, Schneeberger K.Genome Biol. 2019 Dec 16;20(1):277. doi: 10.1186/s13059-019-1911-0. Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombinationHequan Sun, Beth A Rowan, Pádraic J Flood, Ronny Brandt, Janina Fuss, Angela M Hancock, Richard W Michelmore, Bruno Huettel,Korbinian Schneebergerdoi: https://doi.org/10.1101/2021.05.15.444292 Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylationKiefer C, Willing EM, Jiao WB, Sun H, Piednoël M, Hümann U, Hartwig B, Koch MA, Schneeberger K.Nat Plants. 2019 Aug;5(8):846-855.doi: 10.1038/s41477-019-0486-9. Epub 2019 Jul 29. 2018 findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequenciesSun H, Ding J, Piednoël M, Schneeberger K.Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637. 2017 The impact of third generation genomic technologies on plant genome assemblyJiao WB, Schneeberger K.Curr Opin Plant Biol. 2017 Apr;36:64-70.doi: 10.1016/j.pbi.2017.02.002. Epub 2017 Feb 21. Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture dataJiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoël M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G, Schneeberger K.Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3. Publications A complete list of publications of the group can be found here: PUBMED Google Scholar bioRxiv