Selected Publications




Rapid large-scale genomic integression in Arabidopsis suecica via an autoallohexaploid bridge

Vidya Oruganti, Helena Toegelová, Aleš Pečinka, Andreas Madlung, Korbinian Schneeberger


plotsr: visualizing structural similarities and rearrangements between multiple genomes

Manish Goel, Korbinian Schneeberger


Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar

Hequan Sun, Wen-Biao Jiao, Kristin Krause, José A. Campoy, Manish Goel, Kat Folz-Donahue, Christian Kukat, Bruno Huettel,

Korbinian Schneeberger



The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana

Wen-Biao Jiao, Vipul Patel, Janoas Klasen, Fang Liu, Petra Pecinkova, Marina Ferrand, Isabelle Gy, Christine Camilleri, Sigi Effgen,

Maarten Koornneef, Ales Pecinka, Olivier Loudet, Korbinian Schneeberger

doi: 10.1038/s41467-020-14779-y.

Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

José A. Campoy, Hequan Sun, Manish Goel, Wen-Biao Jiao, Kat Folz-Donahue, Christian Kukat, Manuel Rubio, David Ruiz,

Bruno Huettel, Korbinian Schneeberger

doi: 10.1038/s41467-020-14779-y.

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

Jiao WB, Schneeberger K.

Nat Commun. 202 Feb 20;11(1):989. doi: 10.1038/s41467-020-14779-y.


SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

Goel M, Sun H, Jiao WB, Schneeberger K.

Genome Biol. 2019 Dec 16;20(1):277. doi: 10.1186/s13059-019-1911-0.

Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination

Hequan Sun, Beth A Rowan, Pádraic J Flood, Ronny Brandt, Janina Fuss, Angela M Hancock, Richard W Michelmore, Bruno Huettel,

Korbinian Schneeberger


Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation

Kiefer C, Willing EM, Jiao WB, Sun H, Piednoël M, Hümann U, Hartwig B, Koch MA, Schneeberger K.

Nat Plants. 2019 Aug;5(8):846-855.doi: 10.1038/s41477-019-0486-9. Epub 2019 Jul 29.


findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies

Sun H, Ding J, Piednoël M, Schneeberger K.

Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637.


The impact of third generation genomic technologies on plant genome assembly

Jiao WB, Schneeberger K.

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data

Jiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoël M, Woetzel S, Madrid-Herrero E, 

Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G,  Schneeberger K.

Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3.


A complete list of publications of the group can be found here: